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It may be Multimap but it should not create any type of inter-dependency that causes and issue. Though I do know Multimap reads-and-writes database values and it may be corrupting one of them to the point that it is confusing Enhanced Results.
If it happens again following the troubleshooting page to enabled WordPress debugging (DEBUG_LOG, true) in wp-config.php should log the specific error.
Multimap 4.3 is an alpha release which means it may still be doing some odd things that have not been uncovered yet. Alpha releases have not been through the entire test sequence yet to make sure it works against all other plugin combinations.
Thank you for reporting the issues and doing further research.
Let me now if you have other problems with the 4.3 RC versions. Currently the only thing I have on my list for you is tracking down the only_with_tag shortcode filtering in Pro Pack.